For design validation of offshore structures and conceptualisation of wave energy converters, physical model testing performed in wave basin laboratories is often applied. In such cases, knowledge about the wave conditions is of great significance. For validation of the wave condition in such tests, different methods for estimation of the directional wave spectra may be applied. However, different assumptions are imposed in the methods and deviations here from providing uncertainties in the results. The following paper quantifies the influence of nonlinear effects on the accuracy of the estimated directional wave spectra. This is done by analysis of idealised, synthetically generated waves based on second order wave theory and secondly with simplified amplitude dispersion included. The present analyzes show that the uncertainties of the directional wave spectra are proportional to the level of nonlinearity present in the wave field.